Scaffold Ga0370494_016264

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0370494_016264

Scaffold Ga0370494_016264

Overview

Basic Information
Taxon OID	3300034130 Open in IMG/M
Scaffold ID	Ga0370494_016264 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from wetlands in Alaska, United States - Collapse_03_16
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1930
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	64.9149	Long. (^o)	-147.8357	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022911	Metagenome / Metatranscriptome	212	Y
F067048	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0370494_016264_1486_1929	F022911	N/A	ALGFSEESVINSVPLPMSLALSNFMRQAAREDILAYSICSAVLEGTTVNRGAYNPYYEKCAELYKLPQESIAPIYAHLDLDVQYQHSDLFLDILNTVKTIPAARAGRVLEYGHQLVEHIWLWTDSIEKYYGVDSNPMPRPKFSKLLD
Ga0370494_016264_3_467	F067048	AGTAGG	LSSGPLTYGEAEFRRIRELGGGGPFESPEDIRRVLDGIGYLEDWRTAYRVQSVRSSLHAPKITCIDSAILAYGLLELLFGDVKRRLLAIHRIDPVSGEECGHCVALHWNDAGKVGSFAKSNYPGLGHRAAVFDDEMAVAADYAKAYVKMGFQPLY

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