Scaffold Ga0370484_0000002

Overview

Basic Information

• Taxon OID: 3300034125
• Scaffold ID: Ga0370484_0000002
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1274323
• Total Scaffold Genes: 1157
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 692 (59.81%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9095
  • Long. (^o): -147.9448
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001578	Metagenome / Metatranscriptome	669	Y
F006673	Metagenome / Metatranscriptome	367	Y
F006858	Metagenome / Metatranscriptome	363	Y
F010954	Metagenome / Metatranscriptome	297	Y
F051803	Metagenome	143	Y
F091822	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370484_0000002_1170714_1170992	F001578	AGG	MHHQFAGGEPMAWDGDDLAGQAEEVFERQQAAADARAHRGASTVEERARSAKFETLRLSRSRIMGQLSRATNPAHRTMLERALKAINDQMGE
Ga0370484_0000002_1195449_1196186	F006673	N/A	LLACLLFSTQFLAQTPPATRGVIRLKVRYKSKDLPRKRFFLIKGTLEENKSLIERIKQTDPMSRECYYRGRGASEALIKWLNDNECDSVYCREIEEKYLSGSDAVPEFQAAYNQGLREFKTPELARRWLTVNLPADIRDGFYNEKQRVITNLITQAETATTTKVMSVMTDRKGTAYLTDIEPGTYTISNLVGSEAEKTSILWACEKEVKAGNLAIAMRPLILSNEPDPKVKCEIVERPLPVCEKK
Ga0370484_0000002_143170_143403	F091822	GAG	MSESLLISFEDAGRLLGGLHPNTLRQRKAGTANLTHVSGFGRRVMLLREEVNALVELRIAQAQAAERDRRKMLRLAS
Ga0370484_0000002_352165_352773	F006858	AGGAG	MPQTQSLERSFARRIIFTLCLVALALLVGACGKGAGGNSLHVKSAATGEKDVPVKSAYAYAVTKSFTDTSNTITTAAAYNFDAANYDLDATNFAMTLDKPLTSDDQIRVMFSLIGGQGTDGKAPLKVGTYSAKADKFLKVETVGIVSRKGGADSKVWLDRSTLAGEVKVTSASADEISGDIDVSTGDTSIKGSFTVKILKRK
Ga0370484_0000002_712055_713458	F051803	AGGA	MTMNVSNESHAKAQSRKVSFIKLSLRLCARCGLGAVVFLTLFIVPSASAQEAAETIRVRTRVVFMDALVKDKQTGIAISDLKPENFEVFDDGQPRTISYFTREGQARKPLAIVMILDLRDDGAGRFLKREEVRKAIVEELAKLPPGDEVAILAINLNSVDDKTAAIRNGKAMWLTEFTRDPAQFEAALARIPALVAPAPETGETDASKHDQKNPAREGSASVMVNSDADKNATKDSSEAKSKDNDVLETETIKGKNGAVITRTIRKDGSVNVKRVSKDGKVAIQLDNIYDMAGATRDATHMGEEKRPNSQAAIIWLSDGIAPIFYEDRDATERILIRQNAIFNTLTVDMRTLYKFLLPFGQPLIGWTGLSLAGSAKRLAQQSGGEAVHVGRVSDYGAGLAKIIGNLTARYSLGFALGEQEKDDGRMHELGVRVKALDAKGKQRKLDVSSRRGYYTPKSDADQAAANK
Ga0370484_0000002_844773_844985	F010954	GAGG	MKDQTRNIETFKVGATRVNEFDFHKHQGEMHEHHGNKQQQGFGKVETKAARVAALTKHAHEKVLRRSKRR