Scaffold Ga0370483_0000399

Overview

Basic Information

• Taxon OID: 3300034124
• Scaffold ID: Ga0370483_0000399
• Source Dataset Name: Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12361
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 64.9123
  • Long. (^o): -147.839
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002101	Metagenome / Metatranscriptome	593	Y
F003337	Metagenome / Metatranscriptome	493	Y
F004095	Metagenome / Metatranscriptome	453	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370483_0000399_8634_9206	F002101	GAG	LAKKKRVLLLDTSQIKRDLRADVMRKLGIEVDCAADVLEARCWWRADLYNLVLINASSEAESRDKFCTDMRGASPAQRIAFFVGSPEYLAAAPDSDAAPAQPDANALHQDLVAALFAQGSENISQRWGIWEACKRISSVRSVSEARSRAIRETPRPSRWAEAIEQHSQPEELYRPPVFAETIAVQREELL
Ga0370483_0000399_9251_9406	F004095	GGAGG	MSGVNGDKARFNRRRRQKISRRISNQKMLKTLAEKHLVPAGSQTSQKEKAA
Ga0370483_0000399_9760_10440	F003337	N/A	MTVSALRNFISWMLILLFPLSLMAADTGSAIVRGSGGISVNGIEVADSIAIFPGDFLETKPGFIANLDAEGSSVLIQGESYVKFQGNYLVLEHGSVSVGTSTEFSVHIKCMRVDPLSHDRTQFDVTDVNGTVQVAAHKNDVRIQKTGTARKPTSQGSSSESGVVHEGQQATREESAVCGAAAPEEAGHALNTKWLEIGGGVGGGALVLCLLLCKGKSPSNVSPYQP