NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335060_0648898

Scaffold Ga0335060_0648898


Overview

Basic Information
Taxon OID3300034122 Open in IMG/M
Scaffold IDGa0335060_0648898 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)525
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043359Metagenome / Metatranscriptome156Y
F054798Metagenome / Metatranscriptome139N

Sequences

Protein IDFamilyRBSSequence
Ga0335060_0648898_3_305F043359GAGGMEWNNSHKNPPEVGQKIYYFGPNIGIGVGHYSFVESRSFNPYYYDENGVKVYEEKEINLCPHIFTNVNWGTADACDAPFWLPYDEERAKSWCPIIPEEYTK
Ga0335060_0648898_305_454F054798N/AVFGGCEGKMIYLNINEIERLAEIVSELVKLGMSVTAELKYDRWQIEVYK

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