Scaffold Ga0335058_0004685

Overview

Basic Information

• Taxon OID: 3300034121
• Scaffold ID: Ga0335058_0004685
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8830
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012871	Metagenome / Metatranscriptome	276	N
F039140	Metagenome / Metatranscriptome	164	Y
F082704	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335058_0004685_3321_3506	F082704	N/A	MAQSKTKKGICVYLHKDLWNEIDEKRGENSRNTFLSEAIQFSLKFYVEESKVKLQEQTST
Ga0335058_0004685_431_1168	F012871	GGA	MLRNAYTTTLTTTQRVDRAERESAFVADYDLPTFVKLCSKVCAMYGIALPEAQLLQMLHEFIGKHFRWVTFEHFNLAFELNAANELSKKCEHFGALSVSFIGDVLTHYKPHRDKANLQIQREIAQSIEEKAELIKENEMAVNDDSWRRMLKEDIDSFKQGKMTTLELRGVSMMRWLEESKRITAETFTDEEYNLCKAKARKTVFNEQQLSKGMVERMSDRKRQLLKESIQFEGFRELYKLYLSKQ
Ga0335058_0004685_5005_5268	F039140	N/A	MKEKLKEWLKEMLTSSTKVSSKRIVAIFVTINLIVLSYIATFTYYICPIAMFDTLALLTGGLFGGTVIERFTKQKNGSTENSSEDNS