Scaffold Ga0335058_0004218

Overview

Basic Information

• Taxon OID: 3300034121
• Scaffold ID: Ga0335058_0004218
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9396
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006590	Metagenome / Metatranscriptome	369	N
F008815	Metagenome / Metatranscriptome	327	Y
F101173	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335058_0004218_3649_4026	F008815	N/A	MTMPSYTERLVISKPRDYQLVANNAGSGGVVNNNVNESITNVTVTGSLISIFSEEFLNTSSNVLTYTKNSGVLPTTNTDASIQVYQNGQKLIASQYIITQPDTITIDSNTHYDGSNYIVFAININ
Ga0335058_0004218_4013_6235	F101173	GAG	MAVRYQTTVYNEKGRKITISIKDTVFSGSVGTFDTINVQLQYDSESSQGMERFAPIIGSRLRLNLIINTEQLQTLLNDIGFAVEGRFSIELTSYENDNTTVLFKWYGYIVTDLVEFEDVTTDIGFIAQIEAVDGLAYLKTLLYKSDVGPYLGQDTVVQHICNCLNQLDFVQENLVANNLPILHTVFNWHENSINYSADNDFSLRTVINHRAFYHRDTKNNYTYQSCYDVLKKICQTFGARLLFSGNQYWFIQVNEYLNPSNHRYFKYNGFGIQSSGTFNLDFTILNLQTDLANSQLMRLSGGRWSYYPPLKNVVIRYNYFGKQNLLAGKEYSYATNATPEQVITPTLDSTNVEARLSYTGILNFYASALTPANFEPYQFVFAIKLASIVNSFPLQGFADANWTLGSGWSINNGILEGIIIATEAYYTSFSVTANRKYYVNIKIKLENNGELRLRLGGVTKIITETGDYEYIIESTNTDTLKLDSTTSPGFTGKITSLQVKQENKYLKRNVVYTSGFNFQLDAASWETTAAEYEFNVETVFSDNAFVVNKTISFDTLDIPDTAEYVWSMRLKEMRNEAGTNIISNYALSYTIMNNYLEFLPDGTIGGQADIQEYGSDNDEKSSVIFDLDTYLGDGISATTNGALKVKEDAGTFKLSNTWDVANGQGFNKVTQLLVNEVIKGQLRPLPRMIDMPFQNLSIDNVYLPHKVIEYSGGYYIFERGLFDLNTDIWRGDFFKIDDHA
Ga0335058_0004218_8618_8986	F006590	N/A	MKTIKIANADIPIKFGMFVLGTFLRERKLKLSDLSQLGEDLLLALELAFAGVQQGYKAKGEKCPYDLQSFCDLVDTDMGGITRIMEMISNEISPPEDESQKNVVAKAESLPLNTSNAFVSEF