Scaffold Ga0335058_0001884

Overview

Basic Information

• Taxon OID: 3300034121
• Scaffold ID: Ga0335058_0001884
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14737
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (10.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F070109	Metagenome / Metatranscriptome	123	Y
F084221	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335058_0001884_12981_13154	F084221	N/A	MSNHQQQVAEGVTGAVTSILLSVPAWMVDVEFALKIFCLLLSAAASIFTIYKMRKKR
Ga0335058_0001884_13151_13396	F047677	N/A	MKWLKSIFSNEGDASSKRVASILAVIVCINLSYIGTFTDYKTPEYMFDGLLILAGGGLGLTVIESIFDKKKSNDTGSQDTN
Ga0335058_0001884_13708_14007	F070109	GAG	VSLTTEQVRSLLKLKVERDYLKVQVGLLSKSDSIASFVIKDQQKSIDAYSIANEQKAQQLVTVQQELYKEAARKESWRNTALIGIPISFVGGIIFNLLF