Scaffold Ga0335058

Basic Information
Taxon OID	3300034121 Open in IMG/M
Scaffold ID	Ga0335058_0000696 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034121 Open in IMG/M

Scaffold ID

Ga0335058_0000696 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25571
Total Scaffold Genes	44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (20.45%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

25571

Total Scaffold Genes

44 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (20.45%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F066778	Metagenome / Metatranscriptome	126	Y
F070109	Metagenome / Metatranscriptome	123	Y
F072341	Metagenome / Metatranscriptome	121	N
F093876	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335058_0000696_10294_10947	F066778	AGTAG	MKAGAHTFKITPMNYSREPNWQKLKPEIDWDEQEEKLADKLNKYINKNNTVMNQGIVKSQKFVREWNGPSGTIYYFDLIVENNGVNEVGQVGVKDMNSPKIAVGATIHYTSEERTGPTGRKSTNFKLQNPNPFNGGGTGIVQSAYTPRKESPDVQNSISKSVALNNAVLFCKEQKGSKPGDVLDTAEIFLAWLKGEAVEAVQIKAVTNESADDEMPF
Ga0335058_0000696_12351_12650	F070109	GAG	VSLTTSEVRSLLKLKAERDYLKIQFATLSKSDSISAIVIKDQQKSIDAWALTNEKTSQHLVKSQQELYKEAARKESWRSAALIGIPISFVGGIIFNLLF
Ga0335058_0000696_6243_6593	F093876	N/A	MNLFKRKKEPIDLNAKLLPELCSCTIIQWNYSEDIGLESTYAEDIPFMFDARKCVGIQAEVEFRKDGTYYVGERTLALMQGIDNAIVIDVPYNEFKKHFQELKSNIITNDYIISRG
Ga0335058_0000696_7882_8622	F072341	N/A	MSKELVASVQQSFNRSLSAEERAIAECISSPKLHTLNEQEFRELIAQAAVINSIKALPSDIEVTLLQQVTQNTYRSTSIKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKAKVWRELNKALVLPEAEIKHIEPTDPLNVLHADVDRWNDGKHTWVEISAPYNCQRLFKQGIYKKSQWQPEVWARFEDIAKQKVEGKFKASNKVILGESAQAEFDGLQKIELSRLIYIDIIKQINNG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335058_0000696

Overview

Ecosystem & Geography

Associated Families

Sequences