NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335056_0318245

Scaffold Ga0335056_0318245


Overview

Basic Information
Taxon OID3300034120 Open in IMG/M
Scaffold IDGa0335056_0318245 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)858
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004838Metagenome / Metatranscriptome421Y
F041159Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0335056_0318245_229_828F004838N/AMITAQDKILHVANKLGLTSLKDMQASTGAVYDVDSELSGTIFSQAARHANPSITNINENKFEVNEALLVENIGFYVLDSAGSIDNFQQTYGSNAVILFDLVIGNKRVMKDTPVFGAGSPFTFANVGIVSDPALGITNYVPRHQVFMEGTGILIPPQVEWYVSYTIYNVVTGAIIAPAENTRLGCYLFGTKVLLNFNTSI
Ga0335056_0318245_3_227F041159N/AMSQISKLNYVDSKLGAPTSGQQTTRILFNTIEAPGTTSSLIFFRNFQGLTNGQTNLTQNRLDSMESVVIKTIWLA

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