NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335056_0000030

Scaffold Ga0335056_0000030


Overview

Basic Information
Taxon OID3300034120 Open in IMG/M
Scaffold IDGa0335056_0000030 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)85493
Total Scaffold Genes147 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (48.30%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000973Metagenome / Metatranscriptome817Y
F001018Metagenome / Metatranscriptome804Y
F002876Metagenome / Metatranscriptome524Y
F027818Metagenome193Y
F029405Metagenome / Metatranscriptome188Y
F043888Metagenome155Y
F055679Metagenome / Metatranscriptome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0335056_0000030_10450_11151F001018N/AMTQITSTKLNELSVIKLYEHYNALEKSLPLLTPESQDLAKAELESCANLRSEKIDRIYYAMAAHDDALERIKKETELITQAKRHHESQLRSLKGLLNWLKRSLPFDTNKITGRNYQFTLVKKRELTVEVSSDPDVWSSEHRQLYCVEEQVTTTKEIVLRSMSGEVLSTRTEPVTKTKVLPNLDAIRDAYQAGQLLPSGVKVCQEYSIRSKRIYVEPHVELQASEYPGQFLPED
Ga0335056_0000030_31848_32039F002876N/AMACKKSQLVSAINSFGSARATGDGNLIAFAVELIGKLVDTLEFEPESEEEAITPEVVAEETAE
Ga0335056_0000030_37171_37596F000973GAGGMNYGLRKGLEDIATELKGIRNILSSMWHSRYGEDETNILNPQIYADEYVSTEECAKRLGVSDQTIRNWISIGRKTPDKGWVEGVHYVNISPDPNRKAVIRIPWNQMIQAFCKNRQSDLWDFIGNTGARSTKYKTTNPDRLV
Ga0335056_0000030_61728_62621F043888GAGGMGGGGTRVEYKSPEIPRDNTFAEYLKYQQEREARAEQRADTEKAEQKAAAEARKSSGAAAYSGMRSGIESQLRQGLISYNDAASQLRDYASKYDLSPPEQDVAGLTDIYTKELLPGRRATGITSAYKEVLGREAKEEEKTEALERFNQGYYSTVQDLRDSLAKSTEYQDKFNNSYLDNYYDTMYGKQATDAAGKKTGQRTFKFDKNFLPTYADATKARAGVQLPNFADSFTGTPSEIEENLQNVRDTRKYLYSAGLTNLQGEIDKETQKLKNEGSKEVAKINSFGSVASNLVSGFWS
Ga0335056_0000030_72459_72761F055679AGGMELSMDLTTGWKQHTNVPGGYHLVYVDALVGEISIVTGPQGSGLMASNNPGQEPTYEVWFPGMRNPTGHLTLDEIKGIIKYMRQCEEERIWTACSEYEND
Ga0335056_0000030_74042_74422F027818N/AMLSNTIIGNITYMEKVLHEGREFLAITMAVNDMYDGACRVRFNNSNGLLTAYNNGTLVVGHQLILSQYDVRISSIRTHYLKDGLMHQLKYPELALTRVRAIIGAAPRPKPEVVAPTIEPTLEEIAF
Ga0335056_0000030_75864_76067F029405N/AMRDPDFIDEQRNADALDAMADRAYELEEAMREAEQDGWTGVFNDEISNEERYACDHYNERYVINDYH

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.