Basic Information | |
---|---|
Taxon OID | 3300034120 Open in IMG/M |
Scaffold ID | Ga0335056_0000030 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 85493 |
Total Scaffold Genes | 147 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 71 (48.30%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Associated Families | 7 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000973 | Metagenome / Metatranscriptome | 817 | Y |
F001018 | Metagenome / Metatranscriptome | 804 | Y |
F002876 | Metagenome / Metatranscriptome | 524 | Y |
F027818 | Metagenome | 193 | Y |
F029405 | Metagenome / Metatranscriptome | 188 | Y |
F043888 | Metagenome | 155 | Y |
F055679 | Metagenome / Metatranscriptome | 138 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335056_0000030_10450_11151 | F001018 | N/A | MTQITSTKLNELSVIKLYEHYNALEKSLPLLTPESQDLAKAELESCANLRSEKIDRIYYAMAAHDDALERIKKETELITQAKRHHESQLRSLKGLLNWLKRSLPFDTNKITGRNYQFTLVKKRELTVEVSSDPDVWSSEHRQLYCVEEQVTTTKEIVLRSMSGEVLSTRTEPVTKTKVLPNLDAIRDAYQAGQLLPSGVKVCQEYSIRSKRIYVEPHVELQASEYPGQFLPED |
Ga0335056_0000030_31848_32039 | F002876 | N/A | MACKKSQLVSAINSFGSARATGDGNLIAFAVELIGKLVDTLEFEPESEEEAITPEVVAEETAE |
Ga0335056_0000030_37171_37596 | F000973 | GAGG | MNYGLRKGLEDIATELKGIRNILSSMWHSRYGEDETNILNPQIYADEYVSTEECAKRLGVSDQTIRNWISIGRKTPDKGWVEGVHYVNISPDPNRKAVIRIPWNQMIQAFCKNRQSDLWDFIGNTGARSTKYKTTNPDRLV |
Ga0335056_0000030_61728_62621 | F043888 | GAGG | MGGGGTRVEYKSPEIPRDNTFAEYLKYQQEREARAEQRADTEKAEQKAAAEARKSSGAAAYSGMRSGIESQLRQGLISYNDAASQLRDYASKYDLSPPEQDVAGLTDIYTKELLPGRRATGITSAYKEVLGREAKEEEKTEALERFNQGYYSTVQDLRDSLAKSTEYQDKFNNSYLDNYYDTMYGKQATDAAGKKTGQRTFKFDKNFLPTYADATKARAGVQLPNFADSFTGTPSEIEENLQNVRDTRKYLYSAGLTNLQGEIDKETQKLKNEGSKEVAKINSFGSVASNLVSGFWS |
Ga0335056_0000030_72459_72761 | F055679 | AGG | MELSMDLTTGWKQHTNVPGGYHLVYVDALVGEISIVTGPQGSGLMASNNPGQEPTYEVWFPGMRNPTGHLTLDEIKGIIKYMRQCEEERIWTACSEYEND |
Ga0335056_0000030_74042_74422 | F027818 | N/A | MLSNTIIGNITYMEKVLHEGREFLAITMAVNDMYDGACRVRFNNSNGLLTAYNNGTLVVGHQLILSQYDVRISSIRTHYLKDGLMHQLKYPELALTRVRAIIGAAPRPKPEVVAPTIEPTLEEIAF |
Ga0335056_0000030_75864_76067 | F029405 | N/A | MRDPDFIDEQRNADALDAMADRAYELEEAMREAEQDGWTGVFNDEISNEERYACDHYNERYVINDYH |
⦗Top⦘ |