NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335054_0493530

Scaffold Ga0335054_0493530


Overview

Basic Information
Taxon OID3300034119 Open in IMG/M
Scaffold IDGa0335054_0493530 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)686
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008489Metagenome / Metatranscriptome332Y
F091623Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335054_0493530_429_686F091623N/AMPNLTLITLTPPSLPVGYCPTNYQQLANDVISGTQATFNSSIGNSFFNFGASVPALNNQVYPWLDNNGNWWVFQGGYWARQNPVAA
Ga0335054_0493530_8_421F008489N/ALFIDSLEGDVSFNVTYRPDQYPGWIEWTDFSECATTTQCLDLCPIQNFKPQYRPKMRFPTPSDAPCNETISTPARNLYEVQVAMNIIGYCRIKSLRVHAYDIQEPSVGDCRTVFPACTPISACDINPLTYTSESVNP
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