Scaffold Ga0335054_0105359

Overview

Basic Information

• Taxon OID: 3300034119
• Scaffold ID: Ga0335054_0105359
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1737
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003807	Metagenome	467	Y
F058142	Metagenome / Metatranscriptome	135	Y
F058146	Metagenome	135	Y
F093541	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335054_0105359_1123_1575	F058142	AGGAG	MAFTQVTVLNAPTVNTQQIIDVLKRDIPSDWNVPIYDEYPSDQEVVRYGIYVSDVHTVERNPHQLGIQYCATIYHAYDQFTVAYISYQDDPFNIQLNAIIANLVTAIKDDGKQLFDGYFERNFDQVLTYGPTQAERHNWTFRLLRMEFNT
Ga0335054_0105359_1575_1736	F093541	N/A	NFAKERCTTEWEKALQLMNFYDLYQDNPNGPTTKLEENWTADVDYFNGDRRYF
Ga0335054_0105359_383_571	F003807	N/A	MTHQEQVWLKTNEEKLRSLIADEAKTMPMLDNMQATIKQLKAKQAFRLALLNQLLEETNENK
Ga0335054_0105359_54_350	F058146	AGGA	MKLSQLSAKPQLIEVSIDDEETVKEFGEAITFHTWDRQPMEVFMKLANMSNSDTANIIDVVKTLILDDSGKEILTKDAMLPTHVLMKAITKVTDLLGK