NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335053_0071185

Scaffold Ga0335053_0071185


Overview

Basic Information
Taxon OID3300034118 Open in IMG/M
Scaffold IDGa0335053_0071185 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2445
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008991Metagenome / Metatranscriptome324N
F015440Metagenome / Metatranscriptome254N
F017436Metagenome / Metatranscriptome240N
F036561Metagenome / Metatranscriptome169N

Sequences

Protein IDFamilyRBSSequence
Ga0335053_0071185_2220_2444F036561N/ANSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVHRQARSEKEIENLQSTAVAEKKVDLPESLEIL
Ga0335053_0071185_3_479F015440N/AMEGISENERNFQLFKAGLSMVSCLTGEAIRVLEANLKGLQGLFFGLGQWGVIMSICIEYHEKSLVKHKELICERGAKIAESLTLPLIKNLRQLRDLCNKSKSEQTLLELNTFKFHIDYLSNMRSDQWTQEMLKTHIFIVIQQEMDNILKVLNPRITEPL
Ga0335053_0071185_484_882F017436N/AMDGQYRKMFRETVITVQRLSVSAAVFTVTERRNNIVPQNTTTRCRTVVKMMINEIKDDIAPLSRNSDRYRFKRIQLALYVLLSQALSIEGSNERYKALKDMYYFMDRLKSTTFDEWKNFLITGSTEFFDNRF
Ga0335053_0071185_866_1333F008991N/AMNLTVKITEQVEKKLEAVLKGRYDNRTIWMYYKVSLQMLRDIIENLVACHHTTYTLAEKDLYYEQNKVQIVDWIQWIQNRTSSDKLVDLDRLLSKLIKDKAENLVEALTEENPSDRMTTLSMLQMSIQIALFMETQQLLKSPIVIQFCEENGWAV

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