Scaffold Ga0335068_0067945

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0067945
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2049
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F017612	Metagenome	239	N
F029676	Metagenome	187	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0067945_1152_1361	F029676	AGG	MGHLNKIFYNYMTEQDAWDEYLGLLKEDNTFAEQWKDTQDDFEEWCEINDVVLVDTQQRVNQLEEARLQ
Ga0335068_0067945_1788_2048	F003803	N/A	LRFRIYDGDREYTDYAIIDNQQLLTLNYKEIISKFFYDDKVNDEQFLSDGRAVRIESEIPITDAEVKKLEQLSIAYLLEFELEGVA
Ga0335068_0067945_489_734	F017612	GGAGG	MSIPDVDVPIGFLYETTLMKYASGQLTKNGMIMSPEDALQHFKDLATDEGFSEDTIENSAEELLYDLEDIEEQKYQQYKEE