NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0067422

Scaffold Ga0335068_0067422


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0067422 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2059
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028175Metagenome / Metatranscriptome192Y
F036240Metagenome / Metatranscriptome170N

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0067422_1184_1786F036240AGGAMPNESSAPNFFAVVNDMAKRFVELMQSDYRMKRKVGKNFTNAVASGTLEKSLKYRLQIKGQNINVSVYAKGKAGQYFLFRENGVNGTQKSQGAPYSFKKGSGSKPAKGQMSPMQKAIYDWMTIKGIRLRDKSSGKFKKSTEELKQQVAKLIMFKVRRDGIKGWKAFDYAMENIWDEYESKVVAAYAKDFTATIENEFKDI
Ga0335068_0067422_2_1180F028175N/AMAITIDDQPYQYTPIGQRLMLVASSTNVANAGFRFVFDFGSFQVNVQPNAANKGILDLAPIFREKLQHDANQHFNTTDAESTSVAFISCTIKEGWLVDGVFTVSGSGMADIDDVYAFLAEYQVSDGYKPNPNTRYALDGITKYAMSERNVDTHKWIEAPSRGLSNDWVYVPTRVADYGVLYAPSETTLLADNDFDIVVFSSYDNNDDLIDTQFLPLADNPSIVNVVGAFYANVNLWGGLDLTGAKYYTIQFGKETTFPIYTPSSRVYCFYLVADDCRFDNVRLGWTNTCGGVDYFNFTKKSELSFNYDRKQYQKVVGTYNASTFAFNTWDRGTTDRYVTTTKGLQINSDWVSVGEFELLQTLCRSNDVFIINDDGTQTPVLVDTQNFVIKDER
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