Scaffold Ga0335068_0054668

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0054668
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2328
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022649	Metagenome	213	Y
F031866	Metagenome	181	Y
F048309	Metagenome / Metatranscriptome	148	Y
F048996	Metagenome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0054668_1093_1440	F048309	GAG	MLTIKNIDKVINMTCYGRDIYHVRTTTNKIGEEAYVFEFDLIDSGQGGWNKPKEVHLIRNEYNGTYRLFCMGLQLATERRIEISEVKCLTSLLVEISEVLRKTKYWWEHSNLQNK
Ga0335068_0054668_1442_1732	F022649	N/A	MLVIKNPDDIKGMNFVDGRFTLRGVEIFYEKYRFAFKETSRWVYIDLYRKPYWDSERMENMYKVDNGKFTNHWISAKYFGEIKNAKWTFNQALKEL
Ga0335068_0054668_1734_2099	F031866	N/A	MRKITNKSPNRLIDMEFNIPIFNADTQMYKCIDVSEIASSPGGKDYTISFSEIKQKYAVPERINIDMFIPTTDANGEPAHVTMNEVRTKGDVVLTKVMVTKSKLSSLLGLKEVFYNMAKS
Ga0335068_0054668_394_723	F048996	N/A	MLVINNIKKLENKTIGAWRVTGVEIDYQRTSQCPDHNYTIRLSKSYDATGAAIIIERKAGQFGYNVSVCYESYDNVISINAVGEKELKNKDVFLSLMRGILDSEYDKKN