Scaffold Ga0335068_0039996

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0039996
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2789
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F004115	Metagenome / Metatranscriptome	452	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0039996_1504_1866	F000545	N/A	LGFSEMKQDAHPFICSNCKLVTPHIELNRYETSDIAEAPEEVWLIECQRCFLQRIIYPADRVASKEDDITRCDKCGNYKMKAGMCRVCRLAAGFEKQMVRYWNGNETLERPYEDGKAPLY
Ga0335068_0039996_1848_2435	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADTHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKQSPKKAIETTKPALAEFIKEQRPNDPEPILWDVTAIADQLGAEIIDEIPLCSIGDGPMVLKTGTKEGKEYRGWVCPTPKSGHPAKWMRIGSDGHWVFQK
Ga0335068_0039996_2419_2763	F004115	N/A	LDTPLSWVDADFLLQKIGTTLSLTRNHNQNQYCDYCKYRWGQNKNGWDLRAMTPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLDDAISNFAGREKLNVELP