Scaffold Ga0335068_0016954

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0016954
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4525
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019119	Metagenome / Metatranscriptome	231	N
F037129	Metagenome / Metatranscriptome	168	Y
F048842	Metagenome / Metatranscriptome	147	Y
F060730	Metagenome / Metatranscriptome	132	Y
F082372	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0016954_1191_1361	F082372	N/A	MSEEQETGWVSALIKCDLCGHESLSVHHESCDKLECANCGRMSHYEVLEYYTNEEL
Ga0335068_0016954_2327_2506	F037129	N/A	MSVNKKDYKVVEVQDGYTTKYAVKKRIFWLFWKTIKNNAGFDIEYTSKRAAQSYINFLK
Ga0335068_0016954_282_548	F060730	N/A	MGRMKEIYMQVMHENDGQVPEEMTIADIMRMKELEIYNWEQYEREQEKIRLFRVKQENPREITKAAQVREYWEEELRKGKIRKITKDK
Ga0335068_0016954_3424_3843	F019119	N/A	MEKKIMDEMLALSAQIAKEHYELTDNVDRNLNYLWYMYHKGSKVGTFRPFVYMAELQLLKRMGYINDAEIKNMIAMLESSDEENLHMVTLSIKSFRNLRILEHGEYSKVNKTYAKIAKDYPHEILNHEVFMKTMSPANG
Ga0335068_0016954_747_950	F048842	N/A	MKNKAGIVILTFLPILLFVIAIFGEIRCIYKMCTCNWEPIGKAEIVYTVGTFTGAGVVIGYLNIEDK