Scaffold Ga0335068_0007480

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0007480
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7063
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F052570	Metagenome / Metatranscriptome	142	N
F058947	Metagenome	134	Y
F064681	Metagenome	128	Y
F079999	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0007480_1408_1545	F079999	AGGAGG	MSDIFELSFRWQDGAVQVLIYALVIYLGLVILSKITDKREREGKR
Ga0335068_0007480_1807_1968	F058947	AGGAGG	MIACELQDLEDLMTKAGLLLTGEAYDKAQDYLEENCPCSTYSYLLGYEIGRGK
Ga0335068_0007480_1965_2240	F064681	AGCAGG	VKHNLTECDNTSTAYFDKCDECGELTACVCLASLVDEWEIEKVGKEGESFAYRYQFKEKASDLVARFGYASTYREAMDNIACSVKCKEESK
Ga0335068_0007480_357_761	F052570	GGAGG	MKYKLPKGVELEILDYDAERKDRQDSAFYTWGDTSDVALLTYQGREYRVVCVGEMRILYKGEIIRYSNDLIRAGIKRDKDLSKIDDSGGEWINNSWFEVIDEGSNEYTGEVYHEVKDAIETVANWIVDKELVNV