Scaffold Ga0335068_0005992

Overview

Basic Information

• Taxon OID: 3300034116
• Scaffold ID: Ga0335068_0005992
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7954
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (17.65%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004866	Metagenome	420	Y
F005243	Metagenome / Metatranscriptome	407	Y
F006666	Metagenome / Metatranscriptome	367	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0005992_5079_5411	F005243	N/A	LFNLKKLKMAKNKTNNPLDEKEPTLTKEELNARREEISAFYKDNIPHLEVQAEYEMLLATIEKSRAERLQAQMYMAQAYASQKEGGQVPVDSEEAKAFKQAMENAASQID
Ga0335068_0005992_6338_6709	F004866	GAG	MAIVNKVDLKLQVGIDETIKYQILTYCFFENILISNSDLKCLMELSKQPKVELTKFCIFLTEQEVFKSPQSARNALAKAEKKKLIVKNGVNKKTISINKTINVQNNGLVLLDYKILGRESQEA
Ga0335068_0005992_6690_7043	F006666	N/A	VNPKKHKDFKEGIAEEVGVHPQVVDDFISFYYSKLRKKLSALEYPRINVDGLGTFYLRKTKLENSIKKNKSTLGNLAKRTYNGYAQSESIQNNIEQMSKALEQMEADILSKKEFKSK