NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0004259

Scaffold Ga0335068_0004259


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0004259 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9569
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (63.16%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004133Metagenome / Metatranscriptome451Y
F033434Metagenome / Metatranscriptome177Y
F081346Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0004259_5467_5829F004133GGAMKYTKEITDKLIADYKAGVTVADIAASLDVPERSVIAKLSSLGVYTKKSYVNKRGEVPVKKSEHIERIAELLDVDEELLESLEKVNKTVLKLIEAKLSQVDPKPHKSVTTVTYSEEFALN
Ga0335068_0004259_5826_6614F033434N/AMLFKKQEIHSLDFAGTEHLSTQGWETWAEQMQLSHLHTWLLPQLVAWYGNWTLVRESTGVIDSLATIKHNCPDPQSRAFYMLSRIKRSLLVPTQTKTPDYATLTPLIMMGLKRMKGVDYESWRSSTGLQYILESRLFDAVMLSDEDLSICGSLGSDRLLEIQVQGLTTKSGKTAGSMKPAKSTWSLTGIQDTEIGHLPKITQTILTQCWLAHPELRTPYMILDLENWDNLPKPLVSNEIFKQEPEQKLTKVKEAAEVLPWDL
Ga0335068_0004259_8662_8832F081346AGGAGMAKKPDPNKPITHINPPTQVPDRVMPHKPGYNDTVVVPETEANPDKPKKPKKKPSK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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