Scaffold Ga0335068

Basic Information
Taxon OID	3300034116 Open in IMG/M
Scaffold ID	Ga0335068_0001147 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034116 Open in IMG/M

Scaffold ID

Ga0335068_0001147 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	19899
Total Scaffold Genes	39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (17.95%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

19899

Total Scaffold Genes

39 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (17.95%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020651	Metagenome / Metatranscriptome	222	Y
F025648	Metagenome / Metatranscriptome	200	N
F032560	Metagenome / Metatranscriptome	179	Y
F054663	Metagenome	139	N
F086624	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335068_0001147_3221_3898	F020651	AGG	MNIAVLLLTQNRNDLTKRVVDQNFYNSGYDADCFLIDNGSETMPINLFNFKGCNGSFGKRGIGAGVNEGFRMTKDYDGVCLLANDILLPQNWLSNWVMFAKRVSKTGIIGIHCVEELPPLVDGVHKTHTPFGDNFITRELIDAIGGYNEAYDPYGMQDRDFAERATIAGFTNYYLPDLKSEHIGHDVGNGTEYRAMKDASLQRAQSVWEKYQKIYHIDKNIRCEF
Ga0335068_0001147_4423_4644	F054663	GGA	MEIKQEHREWLIANIGNYESAKNGFIRNLELDELKMYEHIYRTYLDANFIVSVWCGSCKFEMIMKLYKWFEKQ
Ga0335068_0001147_5784_6470	F025648	GGA	LQNGLISKEDLPIIEAFVGDKLNLISPVTLRENLAYIFTLIGLTRLPDVTELEVIEDYIRTTYPFFTIQEMRIAFKMAVQGKFDCNIEHYEKFSPKYISGIMNAYKSKANQVRKNIPPPPEEPVKQLTEDEIVEFTKKEWLSGKREDFNRLFNADKVFMILMKQGKITFTNQQIMETIKVVSDDNLYRLNRMHPKDAKDFSKQIKDEDFIELQCKKLALVKYFENLRG
Ga0335068_0001147_7629_7850	F086624	N/A	MSEVKQSFGAWINKTKDGKEVIKFTINGQRYNMWVNSYKDKNSQPDYKIYEDNYVAPTGQVQETKSLTDDDLF
Ga0335068_0001147_7852_8064	F032560	N/A	MQQTYQDLEEGMQNLLPMERQMLLAKIYHYAWYNEEAYKELITFINHWEKHSEFKAVFFNQDSEESTNQI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335068_0001147

Overview

Ecosystem & Geography

Associated Families

Sequences