NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0000518

Scaffold Ga0335068_0000518


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0000518 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30617
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)53 (88.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017454Metagenome / Metatranscriptome240Y
F062686Metagenome / Metatranscriptome130Y
F071196Metagenome / Metatranscriptome122N

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0000518_16467_17021F017454GAGGMAHNIDLPRHRYIHVIESAVHRKGSDTATVPAVWWGMSATPGRMFGCHVLLESGAMVVDLPLHALRHHPDATHRVFPEMAQRWDAYGWHIEAHEPRYLQDLRCRVLSEDHKHIVGTGEVWFYLDHVSDGYSLEPGQHKHHWVVAMSEGHFDCVPQDMVLVEETSFTQDNGIPPIKRQSRIWSCE
Ga0335068_0000518_29332_29598F062686GAGMLAHLLWAAVTVYAIRQIGDIAVRFAPACPETALPPAPVELPDDLVAVAMQERESWAQEEVLRAIRERYEELRDWNKVRAAVGVGRID
Ga0335068_0000518_29602_30615F071196N/AMTIPYTDALLDDALVRAMEGFSNEPTDPNTQVAPNPPEDTGRTPTEDMAALQRALYGADFPGADPATENEMSAWASWTRGLWESRREAVQMHLHLVERNRLFRAGQQWISANGLGPWREPARPRDAARVVYNMMDKALDQRLQILVDQRPGFTVTPVTQDPDDKRKAQAQQLSLEYQYEQLQMPRLSREAAFWSQTDGVSFWHMFWDPDRGPWDERLGEMPGQKKPLGDIGCQTLRVEQVRVSPNATVSQMPHWVVIREVISRAEAAFRYGVTGLDGADTSMGYGDGGPAYSGSEGIGSWVLTQTTIGEGQRLRDEDVTERFTVYIAPHADALPEGLH

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