Scaffold Ga0364945_0040623

Overview

Basic Information

• Taxon OID: 3300034115
• Scaffold ID: Ga0364945_0040623
• Source Dataset Name: Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1278
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location

• Location Name: USA: Colorado
• Coordinates
  • Lat. (^o): 38.9229
  • Long. (^o): -106.9499

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000667	Metagenome / Metatranscriptome	949	Y
F015101	Metagenome	257	Y
F015118	Metagenome / Metatranscriptome	257	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0364945_0040623_182_532	F000667	GAG	MSAAKPAPTRRGDPHPRIAAPLVWTFDGPFSTCLQDMEDTFRRAIVQVGDVSRIVVQIDLSLPALKRRSERGEAIQPAWGQFVDRLSQRYGLPAAPRVRHLKVAGPLATMVIAYRS
Ga0364945_0040623_3_185	F015118	N/A	YRTDRNDPRWTKVIGVLTERNWVADTGRIHGAGDHGPNPAAEIAMQIAARHAGYLPAEGP
Ga0364945_0040623_535_1278	F015101	GGAG	MSIKGWVNRMFTRVDLPPRPTPLAQAVLGGARERREPDSSGATGDRATMPRPEHLGAYAPLVAAIREELERFVASHVRMHLAIAERDRYLLTAIEIDCSDDDEARELLQRFTREFKPEQIKHYLMKEVIGRLPNASAIDLAHFAGLNPASDGDEDEGDEAYGELLAELRRSEPRPARRPYPVSLRGRWSEVDAAAPARARGERVPHTPVAGQALEIEIDDADGSRRVTLPAVVPGRRYAVGNGEGCDI