NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335066_0646497

Scaffold Ga0335066_0646497


Overview

Basic Information
Taxon OID3300034112 Open in IMG/M
Scaffold IDGa0335066_0646497 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)541
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066597Metagenome / Metatranscriptome126Y
F103302Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0335066_0646497_212_541F066597N/ADSQLLFHDKDSEHLQTLTGTPVIVGSGYSGAGPTDAAGDTETPTAANKWMYATGKVRVFLGKPDVVNDSIAQGYAVSGNQNDVRLKAIRPAAVYFDTSIHLAVRVDLTA
Ga0335066_0646497_3_167F103302AGGAGMATQEYAASIQGVSIRVTRLDASGNLLNEAGDSYTTSGFMRLSFTPEYEEGDEIT

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