Scaffold Ga0335063_0004136

Overview

Basic Information

• Taxon OID: 3300034111
• Scaffold ID: Ga0335063_0004136
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9230
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002092	Metagenome / Metatranscriptome	594	Y
F022649	Metagenome	213	Y
F048309	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335063_0004136_1143_1433	F022649	N/A	MLHIKNPDDIKGMNFVNGRFTLRGVEIFYEKYRFAFKETSRWVYVDVYRYPKWDSEQNVNMYRVDNGKFDNHWISAKYFGIIRNMKFTFTEALKDL
Ga0335063_0004136_1435_1776	F048309	N/A	MLTIKNIDKVINMTCYGRDIYHVREFTNSVGQGAYVFEFDIHESGFGGWNAAQEVHLVRNEYDGTYGLFTMGLQVATERRLVLAEIQHFTSLLVEISEVLRTTKYWWENQKTN
Ga0335063_0004136_6532_6879	F002092	N/A	MRTTNQKSMEYLKGNPIVANFINKLNIQRKDHYVKADMVNQWKELTVEVGQKYIRLWYGTSCWGFISRVDGDLKGSPIKKGDLLKCATWKAPAKHARGNIIDGTARYGIYGPEYL