Scaffold Ga0335051_0000174

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335051_0000174

Scaffold Ga0335051_0000174

Overview

Basic Information
Taxon OID	3300034109 Open in IMG/M
Scaffold ID	Ga0335051_0000174 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26441
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (78.79%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050326	Metagenome	145	N
F099179	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335051_0000174_13497_14153	F050326	GGA	MSTAIAALSSASITHSEFVRLVTSTNTYTFCSAAASITVSGITFTGLGSLLSVGDVQRDLKATSDDMIVSLIGIDPTNVSLILANNIKGSTVEIWRGFFDSNYQIITSPTTQFFKRYQGIVNSVSLSEDFDQENRSRTVSCSISCASFRTILENKISGIRTNQNTWRALYPSDSSMDRVDAITGQYFDFGAPPQSGGLSDPNAGSSGEYVYEQDTSGL
Ga0335051_0000174_14150_14587	F099179	AGGA	MRYATKYDMPHLLEMMREYAKEAGVKALQEKQNEDQVKNLFDQMMNGRGFVLVDDNLRGFLAAYISRNFWNRYIRELHEVAWWVMPEYRSTSVGGRLWLRFNQLAQNLLDQKKIDIVCTSLMPSSPEIDYTKYNYRPLQATFFRE

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