Scaffold Ga0335037_0011466

Overview

Basic Information

• Taxon OID: 3300034107
• Scaffold ID: Ga0335037_0011466
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4714
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031377	Metagenome	182	Y
F039000	Metagenome	164	Y
F045551	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335037_0011466_1835_2083	F039000	AGGA	MGKLPYKPDKQIEEIMDNAQTLLNFCGNTFAKPSEAWYACLVSVAILTAELDVPVEVFLEGFEHAYKDAMKAKAKTGPTYDH
Ga0335037_0011466_2073_2318	F031377	AGGA	MITNAHEFTSVSSTNGRVTPFNTGKVQIGLLYQPKPPEMTSSEELVQAALMGWSSIHRPVPLWPVTLGSLIVGILIILTVG
Ga0335037_0011466_2774_2974	F045551	AGGAG	MTEQRELEILRPYVAACGEMVTKNAALEKQLKAIDRLLLDLLMGDIDPMQAMINRQKIKDQFDEQS