NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335037_0011466

Scaffold Ga0335037_0011466


Overview

Basic Information
Taxon OID3300034107 Open in IMG/M
Scaffold IDGa0335037_0011466 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4714
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031377Metagenome182Y
F039000Metagenome164Y
F045551Metagenome152N

Sequences

Protein IDFamilyRBSSequence
Ga0335037_0011466_1835_2083F039000AGGAMGKLPYKPDKQIEEIMDNAQTLLNFCGNTFAKPSEAWYACLVSVAILTAELDVPVEVFLEGFEHAYKDAMKAKAKTGPTYDH
Ga0335037_0011466_2073_2318F031377AGGAMITNAHEFTSVSSTNGRVTPFNTGKVQIGLLYQPKPPEMTSSEELVQAALMGWSSIHRPVPLWPVTLGSLIVGILIILTVG
Ga0335037_0011466_2774_2974F045551AGGAGMTEQRELEILRPYVAACGEMVTKNAALEKQLKAIDRLLLDLLMGDIDPMQAMINRQKIKDQFDEQS

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