Scaffold Ga0335037_0003850

Overview

Basic Information

• Taxon OID: 3300034107
• Scaffold ID: Ga0335037_0003850
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7923
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041191	Metagenome	160	Y
F044325	Metagenome	154	Y
F102493	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335037_0003850_3265_3426	F044325	N/A	MKQLIQRLLFGYRPNPDAYIPKGGAVLTQKGGNAEAIHSALVLMQYQIRNAKD
Ga0335037_0003850_3534_3707	F102493	N/A	MTTTLTLTFHFDYENDDRENNIKGGWVLTDITNGNTPVYLSPKLEQLLNEELDPNNF
Ga0335037_0003850_3898_4314	F041191	GGA	MKLLWKPTKLTCDIVIPDIEKSDGVQKVIGFSRGWHHYNSIRLGIRKENDYCVLYFYAYIKGERTIQRIGRYEIGDLVKCELNWGSYIECKANDGYAFRIAPRHSLPIGYQLYSYAEKDGVEGIEVPIDIEIMNLCVS