NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0232023

Scaffold Ga0335036_0232023


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0232023 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1261
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014823Metagenome / Metatranscriptome259N
F021930Metagenome / Metatranscriptome216N
F088321Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0232023_2_328F088321N/AIELTPLEYLHGGLAASDKLRIQISNLIKQEFAKSQNLRARMSKIHSSIKINQTKANRLSEVFKGDEEVLPLVSRYIANLVQLELITACDNIERMYEAMICLEECQIKI
Ga0335036_0232023_310_747F021930N/AMSDQDLRRVTDLLKEVEFEEKEKVMEAAEQNLLDSLKSVENITKAIDQLVIKETKRRHDFKDLLTTIKSIVVKSKKETIDGIVEIEKSGNRPSFLAIAEKLAVQLSEIEYIISRQSLEQMEKLMKIVTSEDYEEAREKIDLRFTK
Ga0335036_0232023_748_1230F014823N/AMSKKSNKSKEGTPILIDYSLYRDMQEDVREGSQAADELTSVVAQIIYREIKRRKEFRNLLVSVEQTLSTSMRRVHRKVIELRKENSKISKEVLELEFDLERIREVVMSPNLEQMRTLIEDIYDWKVYRQSRSEKDTENLQSIAVAEEEVDLTESLKFNNV
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