Scaffold Ga0335036_0169663

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0169663
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1538
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011580	Metagenome	289	Y
F012869	Metagenome / Metatranscriptome	276	Y
F062759	Metagenome	130	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0169663_1052_1279	F062759	AGG	MKSSRAEYLNFFSNWLHYQFPRNSDIVHNVLIMREVQSIVDDDSEAAYWGDRDCWTMHDIANKQIQARAIEGITA
Ga0335036_0169663_114_287	F011580	GAGG	MTQTQALTKALILAITAPDDDRAHHASRLAESIAQGLNSDQVEQCKLDALEIIGENP
Ga0335036_0169663_472_744	F012869	AGG	MIAIHTKFISATDTRGSRVKAYTVGNSMRKGFQATISYPHEHSFEVAHFQAVKKLVSDNKLEWCLDNMRFGDSADGRGYVFCFDGSKVSE