Scaffold Ga0335036_0145778

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0145778
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1690
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001345	Metagenome / Metatranscriptome	718	N
F004837	Metagenome / Metatranscriptome	421	Y
F012449	Metagenome / Metatranscriptome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0145778_217_477	F004837	N/A	MTQDEYLLATKHRHYWDQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALSYIYQEADQFAEANHHTVTHALNQSPQ
Ga0335036_0145778_474_725	F012449	AGG	MDTLIFPLLISSLTALAIAEYRVLPRWFYHTWFARHKPFSCVTCLTFWVAVALTLPTCGWVLAPVYGLASAGLTVVILQVTNR
Ga0335036_0145778_694_1245	F001345	N/A	MASAETVILDLYRTGEIRKACLTITGGDPLWRDLEQECVLILLEKDPAKILQIQSQGYFKFYVVRLLLNLYRGKNNQFAQKYRHHDLLEELDPNSPIPQSEYDSLMDDLWAIAEAEMDTWAKDGAFPYDKELLRLHLRTGNMKKLSRDTGIPYRSIIYSIDQAKAKIKAAIQNHGHADISPAD