Scaffold Ga0335036_0116402

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0116402
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1941
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobrevibacter → unclassified Methanobrevibacter → Methanobrevibacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043476	Metagenome	156	N
F078327	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0116402_1451_1885	F043476	AGGAGG	MLTLPTNIDKAEIEAFVNHVTAEVMDGNVDPLSVHIRCKAVVKALESIIERTEELAKDTAATYGKGEFKFHGASVQLREPRDVPDFNQDPVCVELADRLKARHELVKTAFKMADTAAIVDPNTGEIVPVLPMKPNKTTLTVTFK
Ga0335036_0116402_468_650	F078327	N/A	MANLLLILPFVLSMVYMMADFHDRWWWYISFCALPVIYLCIFAYLKKNNELNEEDDTYTF