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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034106 Open in IMG/M |
| Scaffold ID | Ga0335036_0077905 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2472 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (100.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002420 | Metagenome / Metatranscriptome | 560 | Y |
| F008303 | Metagenome / Metatranscriptome | 335 | Y |
| F042869 | Metagenome | 157 | Y |
| F075693 | Metagenome | 118 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335036_0077905_1637_1852 | F002420 | AGGAG | MTFRQTTIKYIKDILRPKTIYEVVYTELQEAYLRKLEAETAAEYADATIEYNSRRIERLKQRLFEHAEEDV |
| Ga0335036_0077905_2150_2410 | F042869 | GGAG | MNELIEKDDTIKNYVPIGSIELKLAVARAEGYAIRVEETRYHHVVDGTVVTSVDESKPKYYFFNDRPLPLLDPYRIAMEFYLKEKL |
| Ga0335036_0077905_506_661 | F075693 | AGGAG | MDNEAIQKAWNLMSMHNSELLLENEQLKKQLMRRSLWYAIKRAIRIWRGKE |
| Ga0335036_0077905_654_857 | F008303 | AGGAG | MIDKLILSAVLGTVGYNGLFPEPPPPVTPHMLQVKAKEKSISAMCDRKPKSKTAKDLCRRWKEQQNG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |