Basic Information | |
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Taxon OID | 3300034106 Open in IMG/M |
Scaffold ID | Ga0335036_0044953 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3403 |
Total Scaffold Genes | 10 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (20.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001120 | Metagenome / Metatranscriptome | 772 | Y |
F007026 | Metagenome | 359 | Y |
F019817 | Metagenome | 227 | Y |
F091979 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0335036_0044953_1569_1817 | F091979 | AGG | MRSEFVLMLIAGRFAVGGSPFLEGWKQEYMKAQGSMPPPEKVMDFLTSVIRNESIPLQNKQAEIRMLEQMQRFGPEVRSVVG |
Ga0335036_0044953_2136_2423 | F007026 | N/A | MEQTKKYPPIDWSKNEYHQLQLAVDALKAICAREDKRHMMDEHLDPHMRNVIDEVIGMLEDEIDYDPTPNELGEPPITAGEMHTAAWKEHLAMHS |
Ga0335036_0044953_2970_3170 | F001120 | N/A | MTKDKSSISFDKTIAGFNITENGIKSYSKSFQLGPFQLTVNARESGVRGSISIPGTGLSKQNIKLF |
Ga0335036_0044953_842_1081 | F019817 | N/A | MTTATPALSINQRNLYAYYLNHKKKYGNTPCFVPKLPSQSSRLEQYLQALVRLEEYGLIRVDRSSANYTAWIMLAPKEQ |
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