NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0044953

Scaffold Ga0335036_0044953


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0044953 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3403
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001120Metagenome / Metatranscriptome772Y
F007026Metagenome359Y
F019817Metagenome227Y
F091979Metagenome107N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0044953_1569_1817F091979AGGMRSEFVLMLIAGRFAVGGSPFLEGWKQEYMKAQGSMPPPEKVMDFLTSVIRNESIPLQNKQAEIRMLEQMQRFGPEVRSVVG
Ga0335036_0044953_2136_2423F007026N/AMEQTKKYPPIDWSKNEYHQLQLAVDALKAICAREDKRHMMDEHLDPHMRNVIDEVIGMLEDEIDYDPTPNELGEPPITAGEMHTAAWKEHLAMHS
Ga0335036_0044953_2970_3170F001120N/AMTKDKSSISFDKTIAGFNITENGIKSYSKSFQLGPFQLTVNARESGVRGSISIPGTGLSKQNIKLF
Ga0335036_0044953_842_1081F019817N/AMTTATPALSINQRNLYAYYLNHKKKYGNTPCFVPKLPSQSSRLEQYLQALVRLEEYGLIRVDRSSANYTAWIMLAPKEQ

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