Scaffold Ga0335036_0044953

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0044953
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3403
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F007026	Metagenome	359	Y
F019817	Metagenome	227	Y
F091979	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0044953_1569_1817	F091979	AGG	MRSEFVLMLIAGRFAVGGSPFLEGWKQEYMKAQGSMPPPEKVMDFLTSVIRNESIPLQNKQAEIRMLEQMQRFGPEVRSVVG
Ga0335036_0044953_2136_2423	F007026	N/A	MEQTKKYPPIDWSKNEYHQLQLAVDALKAICAREDKRHMMDEHLDPHMRNVIDEVIGMLEDEIDYDPTPNELGEPPITAGEMHTAAWKEHLAMHS
Ga0335036_0044953_2970_3170	F001120	N/A	MTKDKSSISFDKTIAGFNITENGIKSYSKSFQLGPFQLTVNARESGVRGSISIPGTGLSKQNIKLF
Ga0335036_0044953_842_1081	F019817	N/A	MTTATPALSINQRNLYAYYLNHKKKYGNTPCFVPKLPSQSSRLEQYLQALVRLEEYGLIRVDRSSANYTAWIMLAPKEQ