Scaffold Ga0335036_0026056

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0026056
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4639
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (30.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002227	Metagenome	580	Y
F074789	Metagenome	119	Y
F102590	Metagenome	101	N
F103133	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0026056_1165_1422	F102590	GAG	MKATHTPGPWRQTGINVRAGDALICYAMNHHANAETHEPEKLANARLISLAPQMLLALQRLTHPMADDEDLDYAREVIAKAKGQQ
Ga0335036_0026056_1419_1628	F103133	N/A	MRYKIQIETYNGGWSDLRESSDGGPYEVCLFPTRMAAVQARAEFNELAEYLEGMRIVPAETPETENIYA
Ga0335036_0026056_1720_2058	F074789	N/A	MTSNTIETFRALESDGQVHLRALPETDSYFDVYGEPDSAQERQEIVDQIERTGCWFIVSEYLADGAWHHADSVGMCAGYENPLDPAENCYVEGLMESAIRALEMQSTEGALI
Ga0335036_0026056_329_559	F002227	N/A	MKLTIQSKTNAQTIIDLFNAVINGEVQEHGAQPLSIYDDDKHICSIVAANGEQILELIIEREEGDRIIQQGEPETL