Scaffold Ga0335036_0025894

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0025894
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4655
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011223	Metagenome	293	Y
F095158	Metagenome	105	Y
F104718	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0025894_2539_2745	F011223	GGAG	MSKIKIQLVEDEETPSTWEWMWSSLMTFIKCVGVFAAICVAIGYFSDTKAQTKQCEPTKTVLTKSIFK
Ga0335036_0025894_3206_3472	F104718	GGTGG	MSESMQKEIDAIVAMMAPPPSSAGLLTARDVQDIVRRAASKGALVGWLAAEKDVKERAGRALAQMEYENQNNKDRIKELELEIMGLQQ
Ga0335036_0025894_3740_3922	F095158	AGGA	MTHRQMQLKGNKMKRTYVVEFSPTNLQSDWARKEFTSLTKAMAFISLMVKQGCHCQILPS