Scaffold Ga0335036_0019603

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0019603
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5452
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (68.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051072	Metagenome	144	Y
F081254	Metagenome	114	N
F085379	Metagenome	111	N
F104765	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0019603_1801_2031	F051072	GGAGG	MQNNFNRTQPIKNLTGGGHSAARYTGTHGHVERSAHYCFIPGEGWVSWREIYDQFDAAFREWQMRQALGLSKPKTQ
Ga0335036_0019603_2028_2438	F081254	N/A	MTDQLGQEIIAELRAIRALLANKPAAPAAASAPAPAGAPKDIPQPSELVDDPGSVEVHFGKNAGKPLRSLGAKSVEWYAQEPEPRIGNNGKPFPPRAEDVRLRNAARQLVHGNRGTLAAGSKVTLVTETLTEEVPF
Ga0335036_0019603_4388_4576	F104765	AGGAGG	MKAAEIIAICSIMLSAGIGAGFFWGLRQGERIGRDREWMDSFFRNIKRDAERRDKCGRFKKR
Ga0335036_0019603_4573_4773	F085379	GGAGG	MSARPNPKSEVIDEMVARFAPFKEILSVVRMQQAAVRQRIYNRGYRREYITHEERAHLLRRRGVKL