Scaffold Ga0335036_0011817

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0011817
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7158
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (72.73%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006842	Metagenome	363	Y
F017469	Metagenome / Metatranscriptome	240	Y
F034906	Metagenome	173	Y
F075713	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0011817_3559_3774	F034906	GAG	MKNTHRVKSAADQAVRQRNYQRARQRAFTRLANAFPDIYRAYLEEEKMVDEKMGKKWLDIDGNTSLTDTRA
Ga0335036_0011817_4030_4248	F075713	AGGAG	MKVKQALELLNDLPLEADLAIQWYTKEDIETNLERKITREVWEGVCEYACDEPDMRDFSIPYLLEKMEREDG
Ga0335036_0011817_4245_4379	F017469	GGAGG	MKDICQFCGWEIRKPEWYNSYDGGFACDDCLMDQAVEREKESAI
Ga0335036_0011817_4540_4680	F006842	AGAAGG	MKATPAICGDHLVPISECDCLSYMREVASAAERLIQLAQEREELSK