Scaffold Ga0335036_0004464

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0335036_0004464

Scaffold Ga0335036_0004464

Overview

Basic Information
Taxon OID	3300034106 Open in IMG/M
Scaffold ID	Ga0335036_0004464 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	11925
Total Scaffold Genes	24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025745	Metagenome / Metatranscriptome	200	N
F048311	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0004464_10938_11882	F025745	GGA	VLNNQSGAFDPSNTSSPWYNVLVAGMQVRITGNATVIYTGFLEDNAVNQGIYPTVSLTFVDGLAQIAKAIAPALATSSFQEAANVRAARALDLADWSATARSLTGTTVMQKTKQNMSCLEMLEQCANCVGGRFYVSRTGVATLVDIADKFTRPTRLLFSDQGDANSVGYDGIITNPGTDYVYNEAIVFRGPKKTQKTARYTSSVSTYGLKSKKLDAPIFSETSAANLALYAARKDSDAVVLAEQIDFTAIGIGALATDMLETELNDLVQVKRETYDGRFITINCVVEGLAHSITADNWRVSYFTSVVDPYTITL
Ga0335036_0004464_8856_9002	F048311	AGGGGG	MDNNTELDINVVIAALREQIGLLALDKAMLTARIGDLEKALKEKNDRE

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.