NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0003482

Scaffold Ga0335036_0003482


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0003482 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13508
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (26.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003601Metagenome / Metatranscriptome477Y
F042290Metagenome / Metatranscriptome158Y
F073444Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0003482_1127_1375F073444N/AMNAEEASIKMNCHQHAIKDFDLQLEMNDLEMNMLKDGSGDVLPYNENRMDELEQKKLKLLLGKRFHQNATHAYWYYLERATK
Ga0335036_0003482_12100_12321F003601AGGMEHDYTDDQLLAMAMANIGDFIHDNSPHYVLIEDDPRNEEDYDTWEYGTEPLPHDHTWQHASIDVSVSPSAPE
Ga0335036_0003482_9662_9814F042290N/AMELTYRGCKYDKGQQAKKDRDWWNLTHRPWLRLTYRNIGYLPYLIGGQIK

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