Basic Information | |
---|---|
Taxon OID | 3300034106 Open in IMG/M |
Scaffold ID | Ga0335036_0003482 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 13508 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (26.92%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Wisconsin | |||||||
Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F003601 | Metagenome / Metatranscriptome | 477 | Y |
F042290 | Metagenome / Metatranscriptome | 158 | Y |
F073444 | Metagenome / Metatranscriptome | 120 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0335036_0003482_1127_1375 | F073444 | N/A | MNAEEASIKMNCHQHAIKDFDLQLEMNDLEMNMLKDGSGDVLPYNENRMDELEQKKLKLLLGKRFHQNATHAYWYYLERATK |
Ga0335036_0003482_12100_12321 | F003601 | AGG | MEHDYTDDQLLAMAMANIGDFIHDNSPHYVLIEDDPRNEEDYDTWEYGTEPLPHDHTWQHASIDVSVSPSAPE |
Ga0335036_0003482_9662_9814 | F042290 | N/A | MELTYRGCKYDKGQQAKKDRDWWNLTHRPWLRLTYRNIGYLPYLIGGQIK |
⦗Top⦘ |