Scaffold Ga0335036_0003341

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335036_0003341

Scaffold Ga0335036_0003341

Overview

Basic Information
Taxon OID	3300034106 Open in IMG/M
Scaffold ID	Ga0335036_0003341 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	13785
Total Scaffold Genes	33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	21 (63.64%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003803	Metagenome	467	Y
F034568	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0003341_7655_7936	F003803	GGA	MKKDKTLLRFRIYDGDREYTDYAIIDNKQLLTLNYKEIISKFFYDNKVDDEQFLSDGRAVRVESEIPINDLDVKKLENLSMAFLHDFKIKEVA
Ga0335036_0003341_8150_8341	F034568	GAGG	MNILNCKDYGVKKSWDGWRTYAYVSDGTQMGLMPINWANELFKNKKQAKDFIEDLAAKNGWKK

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