NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0002507

Scaffold Ga0335036_0002507


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0002507 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15988
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (28.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005382Metagenome / Metatranscriptome402Y
F013505Metagenome / Metatranscriptome270Y
F022611Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0002507_14444_14635F022611N/AMWGLPDRQPFNIGPYKLWPCFSKPEFQWFAAINGQPHYFRTTNEAKLFVKDLLATDDPEGLCD
Ga0335036_0002507_3753_4031F005382N/AMDKTNKIKQFIFNAGHSIVSVEFIKADGSIRKLQFNPWDTKEIKGTGTAVKKPSIVRCRDFSIARKEGEGAWRSFDCERVVSIKANGQTLVF
Ga0335036_0002507_7243_7482F013505N/AMHRPYEGHRQDPYLAKLEADRQAQHSGYGIQQYLCADGSQKWEAYGWERITELSIHTTSYGIFDHKWEAEQYFNSIING

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