Scaffold Ga0335036_0002436

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0002436
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16187
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (57.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009669	Metagenome / Metatranscriptome	314	Y
F010817	Metagenome / Metatranscriptome	298	Y
F016772	Metagenome / Metatranscriptome	244	Y
F028084	Metagenome / Metatranscriptome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0002436_10398_10856	F016772	GGAG	MNKLNLIAVALMGIFMVGCSTTNTGGDNQVGGTTAVENALPYIKPAVILACTVVLEQALSPEDRVEKAKMINHISTVVESLTVGQTPTPDQLQKALTDYLPAEKTHWAKYIVAVKDIYAAQFAKLNGDAALAVKVLNAIAAGCKDATEEYVD
Ga0335036_0002436_10853_11143	F009669	N/A	MLFKLFGPNWRSSTSGIITVVAVATAFAIHGDNSLVAFLPDKAEEYIIGISKLIAVVSGIVFALTVKDAAVTGGKVAQTKEAKKRIKKQIGYGENI
Ga0335036_0002436_8386_8535	F028084	N/A	MKKLVLLLPLLFLISCSEPNYESRELPTKYPDTPTSGAAYDATEELYKK
Ga0335036_0002436_9814_10209	F010817	AGAAG	LVLNFFLVGCATITPDKIQDSTASYDASTPSNYNKDNGGLVALLENGAVITPQAKERYNNLIKMYKVKFKKEKAIELVENAGIQPYKDRYGNDLFLIDNEHLVYFGVMNSWLKEKVPADNIIDKTIDKINN