Scaffold Ga0335036_0002036

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0002036
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17823
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (12.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033771	Metagenome	176	N
F045056	Metagenome	153	N
F063621	Metagenome	129	N
F063808	Metagenome	129	N
F067885	Metagenome	125	N
F090300	Metagenome	108	N
F104709	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0002036_10507_11079	F033771	N/A	MSILNKITVDQFQRIVSIEANAIYITSDKKIGVIAVLDGIPIEQVKKMTIAEVNKRYGEINAASKSLSSLAAKRHAKVAGKWYQFEWFIDEISAGQLVELYSYDMTSEQGVIDNLHLILATLSRECRVWKWWPKAYDGKGHKQRAEAMLQMNMGDVWGYAAFFLQLSEPLLTIMRRSLTDQGTTTTTAKA
Ga0335036_0002036_11247_11810	F045056	N/A	MKFTTEIEGDVLGIGADVTKEFSLSRSPDVNAALIRWMQDVIKLTVEGIDRVDAKATLNLRQSVGFAELPVEQKVAQVAMEMASYWKFVEYGVNGVRVNRGAPFSFRSINPSEKDVADIRKWAIDKGLGIPADEIDAAAYNIAKSIKRRGIKGRPFLNPVLSEAKMDELVSSIAQVVGKEISISINV
Ga0335036_0002036_11807_12979	F063621	N/A	MSITVISALPSLLPVGNSDVVVVSSNNTASANFRYVCDVSGSLSSARLKCDKLPTTNNGFFGVSKVVETLIAPKIPQLTSGWQDGGYAVNTNLTFREEFGSPPTVATGGTALASLIAWQAAFRQQDYAAYSPSGYQANTIAGATVTVSNRPTSYTLASADHDFLGFLIKAGSTPVAEIQYNDTSGASARVFTVTGSSNISNYFNMGALGLYNLTAGQTSDSDDGSVLFPLVGASYTVRLILDDAADDKDRTPTYTITIDNCQRYNDLRVFFRNMYGGVDGYTFTRMNRQRVDVDRKTYGYNASVYGDDVYDKQWSVTYRDTYTLNSDWLTDAEFTWLQEMIYASECWIQLGTQLVPVVVQTNTYNVRKRVVDKLQQISVDVQVGYENTAL
Ga0335036_0002036_4939_5508	F104709	N/A	VEARTIILTLYTSGKLRQIARQLATPDLAPDLEHELVIRLYEKPADKIEAMHAGGYLNFYVVRMAINLYRSRNSKFQRDFRHNELREEITEIQLEAADEPYDDRPDAIYQRALQVMDSWAKAGAYPYDKQLFLLWLELGNKKLIERLTKIPWRSISYTINNCKQRLKHELGSDYYIAFGHYDFLGDEPL
Ga0335036_0002036_5495_5695	F090300	N/A	MNRYNVLPAWYYRYARCKPLTCLTCLAFWWGVVLTIAASNLHWMLAIPVGLSAAGLTVLTIKLSEK
Ga0335036_0002036_5692_5919	F067885	GGA	MTLDEALQVLSVKHKLDGYYASQTMSLSPSEVAMLENVANANGYGRTNWWCGSCAVSRLQEMMADAQESRARLSI
Ga0335036_0002036_5934_6125	F063808	N/A	MQTQPDITIEQDARALDWQDRGHLLTNLSNVLDSLEDSTAPNAMHAKVAVIEKIIDIVTNMEA