Scaffold Ga0335036_0001421

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0001421
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21214
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016519	Metagenome / Metatranscriptome	246	N
F079803	Metagenome	115	Y
F085678	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0001421_14080_14538	F016519	N/A	MATKRFDKELHDTYDKFGRDVVKSYVSSFWNMEAKDNPDRYGIDLHLYKDDLLVGYAEVEVRLSWKTVEFPYEDLNVPARKKKLLTQEIPTHFFSINKDGTALFHCEAAAVLASEIKESRNKYVYQGELFYKVSLDRLSYVVLSTTGEATLS
Ga0335036_0001421_18263_18496	F085678	AGGA	MNVELLDEHDDGSATYQFDLTWEERNLLLNLGIITAIKNGINEGAEYVGDTSLGNPECGTSDSVHGEGEQPRESEQP
Ga0335036_0001421_331_555	F079803	N/A	MEDITHAQIYERLCAVEAKVDKLDKSTEAVVAAFNAASGAFVVLEWLARAVKPILVIGAFCGAIWLAIENKLHH