Scaffold Ga0335036

Basic Information
Taxon OID	3300034106 Open in IMG/M
Scaffold ID	Ga0335036_0001123 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034106 Open in IMG/M

Scaffold ID

Ga0335036_0001123 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	24174
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (15.62%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

24174

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

5 (15.62%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F022633	Metagenome	213	N
F063621	Metagenome	129	N
F071181	Metagenome	122	Y
F105001	Metagenome	100	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0001123_1773_2336	F105001	N/A	MKLLNRLTVAQFQELTAIDPDMGNLRKKVNTVCIVDGVEQSAVEGWTIDQLNARAAVIDEECGALSMLPAKRVVRIGTKRYRMEWFIDQMSAGQMMELLNYQLTSDREVVANLHLLLASLTREVTWWGKTLAYDGGKHADRAEAMKKAKMADVWGFACFFLRHSEPLLKIMQTYFDRASKKKTAGKA
Ga0335036_0001123_18625_18879	F071181	N/A	MATFRKYKWNTKAEFEAFYQLSQPDATCVELGDIDNTYCVDLLWDDQPNADWEQFETWPPPVGVHTYLGWDEQYTKDYNERISE
Ga0335036_0001123_18860_19180	F022633	N/A	MKEFLNSIGINIGLTIAGFLGSLLLLPKQRNWKMQLVSVFSGSLCATYLAPVLIGFLNINAPNIQYGLAFLVGFSGVKIAEVLEAKLLKTLNATPIQADSAEHTPD
Ga0335036_0001123_3096_4280	F063621	N/A	MSITIVSSLPALLPVGNSDVVVVSSNLTASANFRYICDVSGSTASARLKCDKLPTTSYGFFGVSKVVETLILPAVPQTTSGWQSGGYAVKANLTFREEYGSPPTVATGTTTGSVIAWQAAFRQQDYNTAIANPTTYYAETVSGDAIAQKTISNRPASSTVTSGTNDFIGIVMNDTNVTGVCIRVEYSTGRNFIVSGTVSGCSMLINAGPRGLYNLTSGQTSDTQAGDINFPSQGGSITVRAAFNSAGTFTGVSRTGIYTYTIDNCERYDQLRVYFRNMYGGVDGYTFTKKNRKSVNVNRQTYGYNNSVYGDDQFDKQWSVTYRDTYTLQSDWLTDAEFSWLQEMVYSPECWIELSGALVPVVVQTNTYNIMKRINDRLQAITVDVQVGYENTAL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335036_0001123

Overview

Ecosystem & Geography

Associated Families

Sequences