NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0001123

Scaffold Ga0335036_0001123


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0001123 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24174
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (15.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022633Metagenome213N
F063621Metagenome129N
F071181Metagenome122Y
F105001Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0001123_1773_2336F105001N/AMKLLNRLTVAQFQELTAIDPDMGNLRKKVNTVCIVDGVEQSAVEGWTIDQLNARAAVIDEECGALSMLPAKRVVRIGTKRYRMEWFIDQMSAGQMMELLNYQLTSDREVVANLHLLLASLTREVTWWGKTLAYDGGKHADRAEAMKKAKMADVWGFACFFLRHSEPLLKIMQTYFDRASKKKTAGKA
Ga0335036_0001123_18625_18879F071181N/AMATFRKYKWNTKAEFEAFYQLSQPDATCVELGDIDNTYCVDLLWDDQPNADWEQFETWPPPVGVHTYLGWDEQYTKDYNERISE
Ga0335036_0001123_18860_19180F022633N/AMKEFLNSIGINIGLTIAGFLGSLLLLPKQRNWKMQLVSVFSGSLCATYLAPVLIGFLNINAPNIQYGLAFLVGFSGVKIAEVLEAKLLKTLNATPIQADSAEHTPD
Ga0335036_0001123_3096_4280F063621N/AMSITIVSSLPALLPVGNSDVVVVSSNLTASANFRYICDVSGSTASARLKCDKLPTTSYGFFGVSKVVETLILPAVPQTTSGWQSGGYAVKANLTFREEYGSPPTVATGTTTGSVIAWQAAFRQQDYNTAIANPTTYYAETVSGDAIAQKTISNRPASSTVTSGTNDFIGIVMNDTNVTGVCIRVEYSTGRNFIVSGTVSGCSMLINAGPRGLYNLTSGQTSDTQAGDINFPSQGGSITVRAAFNSAGTFTGVSRTGIYTYTIDNCERYDQLRVYFRNMYGGVDGYTFTKKNRKSVNVNRQTYGYNNSVYGDDQFDKQWSVTYRDTYTLQSDWLTDAEFSWLQEMVYSPECWIELSGALVPVVVQTNTYNIMKRINDRLQAITVDVQVGYENTAL

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