Scaffold Ga0335036_0000815

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0000815
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28705
• Total Scaffold Genes: 62
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (85.48%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001530	Metagenome / Metatranscriptome	676	Y
F035674	Metagenome	171	N
F046865	Metagenome	150	Y
F097185	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0000815_27881_28051	F001530	N/A	MQITKEFLDSEIRDLETEAQKASTFLTQAQATIQAYKMLINRLDAPEPEQQNDDAI
Ga0335036_0000815_7270_7569	F035674	AGGAG	MKPAKEVCLRMALYQYTARNEQLMWRWLFTWAAWKDEPEFFADPRVPVFKPRKAKKRWKNLTNSETNAIIKQMPNWTTDHLNTFIFKVLVEEKFKEKNA
Ga0335036_0000815_8680_8844	F097185	GGA	MTKKQRAYLHILTLPFVISAAVEFLPAWLYWPIAVICGMAWFGACVILAEVNHD
Ga0335036_0000815_9200_9343	F046865	GAGG	MIIKQLDPVTNQIRNNTLEEVAQEFDKMKNGGDTTASFAVYVRSMKR