Scaffold Ga0335036_0000742

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0000742
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29849
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (32.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F004232	Metagenome / Metatranscriptome	447	Y
F005388	Metagenome / Metatranscriptome	402	N
F011216	Metagenome / Metatranscriptome	293	Y
F028148	Metagenome	192	Y
F057983	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0000742_10159_10392	F002227	N/A	MKLTIQSKTNAQTIVDLFNAIITGECEAQGVKPLSIYDEDKHICSITDADGNQILELIIEREQGDKLVQTGEPEDAP
Ga0335036_0000742_11320_11919	F028148	N/A	MKTIHQIIREIQFFDPAIRAFDAHDLPQSVRAYLHHNYRMDARLTDEEQQLVETSFEHFADNLRESFQDDPRPDATRFYLFDDLSLYVRTNAGPELWADAQVFVVERILPAMRLTRLEADLMREIGMDEQVSEVRDDFFSSFAHILHRDCGIPHCDAREHWNAWSRQAPDSLTEKLELGGGESGRAEGIRFASEYTVNA
Ga0335036_0000742_14144_14587	F000922	AGG	MTSEQWTKAKSLYLAGKTWKAISSDLGLNQSTLLSKASREGLPKVRKEMRNTVSSKETVSLESLSALVRSKLAADAASTLERIEGYSLDGIKDESVRETILGSVAKRSALVFGWSEQGEAASVSINLLGSMPDRIAEIQVTGETGKE
Ga0335036_0000742_15485_16723	F005388	N/A	MSCPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSYNTTSIEPTAAEEWSAITLASGENGGACDVTYNDVPVGFNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFREDLRQADMGSGSGAELLKRIGANRVIKNFRHVPNLFPPRFTYAGGKYTLVQPFTSSSGTKGTVFSVNSSWTTAPFEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKFNTDCEDPLEKKGQHYAEFIHASEPVFTNQGMTIIFRRCTGALTQIICS
Ga0335036_0000742_2971_3186	F011216	AGAAGG	VNHLVNANKKVVSKTPRTDRQPVVTVAFQHFVKAGFARQLERQLAGANKRIEELEAKVDELHDLEKWLEGR
Ga0335036_0000742_68_529	F004232	N/A	MKSNQTIVAVDPGVGGGFAVKTADEILLFPMPESLPDMAQLLSGFKLADSHLWIEKVPKFVSKLTPAASVATLHENYGIVQGLAYAQGYALHRVEPKIWQDPLGLGGRKACVTGPEWKRKLKSKAQELYPNLDVSLKNCDALLILHYAQGGGR
Ga0335036_0000742_7398_7826	F057983	N/A	METNQQFVPIEKFEKLSKFLEKISNRLTEIEAENKRIVEQLESGGNTDIDTWEGFGPKPERQPFNPNAETYTLELRNGPYTIRRDDGESDKEWQRRKEHLMDQRVTFLNGSGQNGTPEQVAYLQRIEARLGRKIFQYPLATT
Ga0335036_0000742_9564_9821	F001964	GGAGG	MIRNLFAPPRFKVQISGAIGWSDLKERVVRFETLEYATRKEAETTARELNPGEYTQGRIRVVPVEVPEDYDVYPVVERVSEKHST