Scaffold Ga0335036_0000644

Overview

Basic Information

• Taxon OID: 3300034106
• Scaffold ID: Ga0335036_0000644
• Source Dataset Name: Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31935
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (28.85%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location

• Location Name: USA: Wisconsin
• Coordinates
  • Lat. (^o): 43.0995
  • Long. (^o): -89.4045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000922	Metagenome	833	Y
F001964	Metagenome	610	Y
F002227	Metagenome	580	Y
F005388	Metagenome / Metatranscriptome	402	N
F012111	Metagenome	283	N
F071018	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335036_0000644_11077_11511	F000922	N/A	MTAKQWKSATAQYLSGKDWAAIASDLSVPINTLRSRACREGITKVKAQMQTVCIEKKAQSLESLSALVRSKLAADAASTLERVDSYDLDGLKDEATRETILNSVAKRSALVFGWSEAGEATSVSINLLGSMPDRFAEVQVSNPV
Ga0335036_0000644_12429_13667	F005388	N/A	MACPNVFNAFAVATESLAQDVYKRASYRSMWLNMIERGEYPQGTGLTQTSFTTTSIEPTAAEEWSAITLASGENGGACDVTYSEVPVGYNAVTWSPERFALKGPLLCKDDLTFDHRVEAFLRVYLEKLSIRAQRSWETRYQNTFAKFAIKAVADSSFTQVETIPSGVNEFPWIQTGSAGQALNQSTSELTQEMLDVAAATLIRNGATNPDSSGFISYSSDGPVFPLYIGLEASQRIAQNNPAFRDDLRFADQGSGAGAELLKRIGANRVIKNYRHVPNLFPPRFTYAGGKYTLVQPFTSASGTKGTVFSVNSSWTTAPYEAAFIVTPYVFKSHIVRPVNRVGDLSWMPTNYMGEWQWVTGAYKLDVDCADPLEKKGQHYAEFVHASEPIFTSQGMTIIFRRCTGALTQVICS
Ga0335036_0000644_29243_31090	F012111	AGG	MSERAPRRYTDGSVTFEGGIDAGVMPSEVDKNQVAFAVNASFRQGFISPRPGFIQKDYDVCLSITADSTLVTADQTNVTADGYSEECYGSSNLTGVFQCALPYIGDNGATFILMLISGKVWLYDCLQNSVQNLSASPNLENPSNILDGWMVQAENFVVIQDGQSAPLIFNGSSLRRATTDEIKCGRVMAYVNGRIWYALANGFSFRATDIVYGDGTRASVLKETENTFLNEGGDFAVPSDSGGITAMAVPGDPDTSLGQGPLLVFTPRYVFSVQAPVDRDTWKNLNYPIQAISLLTSGALGARSAITVNGDVFYRAVDGVRSFIIARRSFTDPGNTPISGEILNIAENDQTSLLWSGSAVVFDNRLLMTGQPRYNAEGVIHKALMVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKTESVYGDRCFSIARGENGTIQIWEISKGDKFDNNIADGKKEIQWLVHTRAYNFELPFGLKRLDSGDIFIDSLDGDASFNVEYRPDQYPGWIEWADWAECATTLQCQPACPLVNFQPQYRPKMRLPTPSDIPCNSSISTPTRNMYEVQMSLTVTGYCRIKSIRVHAYDVQEPAVGECLVFEGCKTLDACDVNPFTYTSE
Ga0335036_0000644_4919_5410	F071018	GGAG	MFRLMEPLHHDADPNRSQVLAHIMVNMQCDLGRASRAFNSMRHPKSKVLVFDHVHRMWKGCDWLPSDENSKDAMILVEHRALERRVIAMDGELRKALKEIKRLNKQMADLYSDAKEMGKSQDEDVNWLEEMKESLGRPSEKPRKTKHQPPVNTIESMVAAAWK
Ga0335036_0000644_6717_6962	F001964	GGAGG	MSRNLFAKPVYKVQLSGAIGWSDMKEKVVSYQTVEFESRKDAERAARELNPGEYTQGRIRVVPVELSEDYDVYPVAERSKP
Ga0335036_0000644_7300_7533	F002227	N/A	MKLTIQSKANAQTIVDLFNAILTGEEQEHGATPLSIYDDNKHICSLIAKDGTQILELIIEREEGDVLCSRTPDLETL